Publications

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Pollen AA, Bhaduri A, Andrews MG, Nowakowski TJ, Meyerson OS, Mostajo-Radji MA, Di Lullo E, Alvarado B, Bedolli M, Dougherty ML, Fiddes IT, Kronenberg ZN, Shuga J, Leyrat AA, West JA, Bershteyn M, Lowe CB, Pavlovic BJ, Salama SR, Haussler D, Eichler EE, Kriegstein AR.
Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution.
Cell. 2019 Feb 7;176(4):743-756.e17.
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Song J*, Lowe CB*, Kingsley DM.
Characterization of a human-specific tandem repeat associated with bipolar disorder and schizophrenia.
Am J Hum Genet. 2018 Jul 27. pii: S0002-9297(18)30238-6.
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Lowe CB*, Sanchez-Luege N*, Howes TR, Brady SD, Richardson RR, Jones FC, Bell MA, Kingsley DM.
Detecting Copy Number Variation Associated With Phenotypic Classes.
Genome Res. 2018 Feb;28(2):256-265
PubMed
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Lowe CB, Clarke JA, Baker AJ, Haussler D, Edwards SV.
Feather development genes and associated regulatory innovation predate the origin of Dinosauria.
Mol Biol Evol. 2015 Jan;32(1):23-8.
PubMed
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Lowe CB, Haussler D.
29 mammalian genomes reveal novel exaptations of mobile elements for likely regulatory functions in the human genome.
PLoS One. 2012;7(8):e43128.
PubMed
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29 mammals sequencing and analysis consortium.
A high-resolution map of human evolutionary constraint using 29 mammals.
Nature. 2011 Oct 12;478(7370):476-82.
PubMed
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Anolis genome sequencing consortium.
The genome of the green anole lizard and a comparative analysis with birds and mammals.
Nature. 2011 Aug 31;477(7366):587-91.
PubMed
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Lowe CB, Kellis M, Siepel A, Raney BJ, Clamp M, Salama SR, Kingsley DM, Lindblad-Toh K, Haussler D.
Three periods of regulatory innovation during vertebrate evolution.
Science. 2011 Aug 19;333(6045):1019-24.
PubMed Interviewed by Joe Palca on NPR's All Things Considered
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McLean CY, Bristor D, Hiller M, Clarke SL, Schaar BT, Lowe CB, Wenger AM, Bejerano G. Cited 1000+
GREAT improves functional interpretation of cis-regulatory regions.
Nat Biotechnol. 2010 May;28(5):495-501.
PubMed
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Lowe CB, Bejerano G, Salama SR, Haussler D. Stephen J. O'Brien Award
Endangered species hold clues to human evolution.
J Hered. 2010 Jul-Aug;101(4):437-47.
PubMed
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Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.
Comparative genomics search for losses of long-established genes on the human lineage.
PLoS Comput Biol. 2007 Dec;3(12):e247.
PubMed
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Wang T, Zeng J, Lowe CB, Sellers RG, Salama SR, Yang M, Burgess SM, Brachmann RK, Haussler D.
Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53.
Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18613-8.
PubMed
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Lowe CB, Bejerano G, Haussler D.
Thousands of human mobile element fragments undergo strong purifying selection near developmental genes.
Proc Natl Acad Sci U S A. 2007 May 8;104(19):8005-10.
PubMed
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Bejerano G, Lowe CB, Ahituv N, King B, Siepel A, Salama SR, Rubin EM, Kent WJ, Haussler D.
A distal enhancer and an ultraconserved exon are derived from a novel retroposon.
Nature. 2006 May 4;441(7089):87-90.
PubMed